2020

Copara J, Knafou J, Naderi N, Moro C, Ruch P, Teodoro D. Contextualized French Language Models for Biomedical Named Entity Recognition. In Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 31e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues. ATALA; 2020.
Copara J, Naderi N, Knafou J, Ruch P, Teodoro D. Named entity recognition in chemical patents using ensemble of contextual language models. Working Notes of CLEF2020—Conference and Labs of the Evaluation Forum (2020). 2020.
Teodoro D, Knafou J, Naderi N, Pasche E, Gobeill J, Arighi CN, et al.. UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020;2020. https://doi.org/10.1093/database/baaa026

2019

Van Rijen P, Teodoro D, Naderi N, Mottin L, Knafou J, Jeffryes M, et al.. A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. In Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. [Internet]. 2019. http://ceur-ws.org/Vol-2380/paper_79.pdf
Naderi N, Gobeill J, Teodoro D, Pasche E, Ruch P. A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. In Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. [Internet]. 2019. http://ceur-ws.org/Vol-2380/paper_111.pdf

2018

Britan A, Cusin I, Hinard V, Mottin L, Pasche E, Gobeill J, et al.. Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database [Internet]. 2018;2018. https://academic.oup.com/database/article/doi/10.1093/database/bay129/5255187http://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdfPDF icon bay129.pdf (18.93 MB)
Teodoro D, Sundvall E, Junior MJoão, Ruch P, Freire SMiranda. ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers. PloS one. 2018;13:e0190028. PDF icon journal.pone_.0190028.pdf (3.18 MB)
Pasche E, Gobeill J, Mottin L, Mottaz A, Teodoro D, Van Rijen P, et al.. Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC 2017 Proceedings [Internet]. 2018;. https://trec.nist.gov/pubs/trec26/papers/BiTeM-PM.pdfPDF icon BiTeM-PM-2017.pdf (318.65 KB)

2017

Pasche E, Chinali M, Gobeill J, Ruch P. Development and Evaluation of a Case-Based Retrieval Service. Studies in health technology and informatics. 2017;235:186. PDF icon developmentCBR_preprint.pdf (176.88 KB)
Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Michel P-A?, et al.. Triage by ranking to support the curation of protein interactions. Database [Internet]. 2017;2017(1). https://academic.oup.com/database/article-lookup/doi/10.1093/database/bax040PDF icon bax040.pdf (830.35 KB)

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