2020
. Contextualized French Language Models for Biomedical Named Entity Recognition. In Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 31e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues. ATALA; 2020.
. BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. In Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020) [Internet]. Online: Association for Computational Linguistics; 2020. https://www.aclweb.org/anthology/2020.wnut-1.40
2020.wnut-1.40.pdf (842.21 KB)
2020.wnut-1.40.pdf (842.21 KB) . An extended overview of the CLEF 2020 ChEMU Lab : information extraction of chemical reactions from patents [Internet]. Proceedings of the CLEF 2020 conference. 22-25 September 2020; 2020. p. 31 p. http://hesso.tind.io/record/6175
. Named entity recognition in chemical patents using ensemble of contextual language models. Working Notes of CLEF2020—Conference and Labs of the Evaluation Forum (2020). 2020.
. UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020;2020. https://doi.org/10.1093/database/baaa026
2019
. A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. In Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. [Internet]. 2019. http://ceur-ws.org/Vol-2380/paper_79.pdf
. A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. In Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. [Internet]. 2019. http://ceur-ws.org/Vol-2380/paper_111.pdf
2018
. Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database [Internet]. 2018;2018. https://academic.oup.com/database/article/doi/10.1093/database/bay129/5255187http://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdf bay129.pdf (18.93 MB)
bay129.pdf (18.93 MB) . ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers. PloS one. 2018;13:e0190028. journal.pone_.0190028.pdf (3.18 MB)
journal.pone_.0190028.pdf (3.18 MB) . Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC 2017 Proceedings [Internet]. 2018;. https://trec.nist.gov/pubs/trec26/papers/BiTeM-PM.pdf BiTeM-PM-2017.pdf (318.65 KB)
BiTeM-PM-2017.pdf (318.65 KB)