BITEM Biblio

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2020
Knafou J, Naderi N, Copara J, Teodoro D, Ruch P. BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. In: Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020). Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020). Online: Association for Computational Linguistics; 2020. Available from: https://www.aclweb.org/anthology/2020.wnut-1.40PDF icon 2020.wnut-1.40.pdf (842.21 KB)
Copara J, Knafou J, Naderi N, Moro C, Ruch P, Teodoro D. Contextualized French Language Models for Biomedical Named Entity Recognition. In: Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 31e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues. Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 31e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues. ATALA; 2020.
He J, Nguyen DQuoc, Akhondi SA, Druckenbrodt C, Thorne C, Hoessel R, Afzal Z, Zhai Z, Fang B, Yoshikawa H, et al. An extended overview of the CLEF 2020 ChEMU Lab : information extraction of chemical reactions from patents. Proceedings of the CLEF 2020 conference [Internet]. 2020 :31 p. Available from: http://hesso.tind.io/record/6175
He J, Nguyen DQuoc, Akhondi SA, Druckenbrodt C, Thorne C, Hoessel R, Afzal Z, Zhai Z, Fang B, Yoshikawa H, et al. An extended overview of the CLEF 2020 ChEMU Lab : information extraction of chemical reactions from patents. Proceedings of the CLEF 2020 conference [Internet]. 2020 :31 p. Available from: http://hesso.tind.io/record/6175
Copara J, Naderi N, Knafou J, Ruch P, Teodoro D. Named entity recognition in chemical patents using ensemble of contextual language models. Working Notes of CLEF2020—Conference and Labs of the Evaluation Forum (2020). 2020 .
Teodoro D, Knafou J, Naderi N, Pasche E, Gobeill J, Arighi CN, Ruch P. UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020 ;2020. Available from: https://doi.org/10.1093/database/baaa026
2019
Van Rijen P, Teodoro D, Naderi N, Mottin L, Knafou J, Jeffryes M, Ruch P. A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. In: Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. ; 2019. Available from: http://ceur-ws.org/Vol-2380/paper_79.pdf
2013
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Vishnyakova D, Gobeill J, Oezdemir-Zaech F, Kreim O, Vachon T, Clade T, Haenning X, Mikhailov D, Ruch P. Electronic processing of informed consents in a global pharmaceutical company environment. Studies in health technology and informatics. 2013 ;205:995–999.PDF icon SHTI205-0995 (1).pdf (727.63 KB)
2008
Bagliesi G, Bauerdick L, Belforte S, Bloom K, Bockelman B, Bonacorsi D, Brew C, D'Hondt J, Egeland R, Elgammal S, et al. The CMS data transfer test environment in preparation for LHC data taking. In: Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE. Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE. IEEE; 2008. pp. 3475–3482.PDF icon GBNSSMIC2008.pdf (626.57 KB)
Bagliesi G, Bauerdick L, Belforte S, Bloom K, Bockelman B, Bonacorsi D, Brew C, D'Hondt J, Egeland R, Elgammal S, et al. The CMS data transfer test environment in preparation for LHC data taking. In: Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE. Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE. IEEE; 2008. pp. 3475–3482.PDF icon GBNSSMIC2008.pdf (626.57 KB)
Bagliesi G, Bauerdick L, Belforte S, Bloom K, Bockelman B, Bonacorsi D, Brew C, D'Hondt J, Egeland R, Elgammal S, et al. The CMS data transfer test environment in preparation for LHC data taking. In: Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE. Nuclear Science Symposium Conference Record, 2008. NSS'08. IEEE. IEEE; 2008. pp. 3475–3482.PDF icon GBNSSMIC2008.pdf (626.57 KB)

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