BITEM Biblio

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Author Title [ Type(Asc)] Year
Filters: First Letter Of Last Name is P and Author is Pasche, Emilie  [Clear All Filters]
Gobeill J, Pasche E, Teodoro D, Ruch P. Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009. Multilingual Information Access Evaluation I. Text Retrieval Experiments. 2010 ;6241:444–451.
Journal Article
Vishnyakova D, Pasche E, Lovis C, Ruch P. Utilization of ontology look-up services in information retrieval for biomedical literature. Stud Health Technol Inform. 2013 ;186:155-9.PDF icon efm2013.pdf (274.96 KB)
Pasche E, Gobeill J, Teodoro D, Vishnyakova D, Gaudinat A, Ruch P, Lovis C. Using multimodal mining to drive clinical guidelines development. Studies in health technology and informatics. 2011 ;169:477-81.PDF icon UsingMultimodal_2011.pdf (206.92 KB)
Vishnyakova D, Pasche E, Ruch P. Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. Database [Internet]. 2012 ;2012. Available from:
Pasche E, Gobeill J, Teodoro D, Gaudinat A, Vishnyakova D, Lovis C, Ruch P. A user-friendly tool for medical-related patent retrieval. Studies in health technology and informatics. 2012 ;174:121-5.PDF icon userfriendly_2012.pdf (621.48 KB)
Pasche E, Gobeill J, Vishnyakova D, Ruch P, Lovis C. Use of controlled vocabularies to improve biomedical information retrieval tasks. Stud Health Technol Inform. 2013 ;192:1068.PDF icon UseOfControlled2013.pdf (122.26 KB)
Teodoro D, Knafou J, Naderi N, Pasche E, Gobeill J, Arighi CN, Ruch P. UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020 ;2020. Available from:
Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Michel P-A?, Bairoch A, Gaudet P, Ruch P. Triage by ranking to support the curation of protein interactions. Database [Internet]. 2017 ;2017(1). Available from: icon bax040.pdf (830.35 KB)
Gobeill J, Teodoro D, Pasche E, Ruch P. Report on the trec 2009 experiments: Chemical ir track. the Eighteenth Text REtrieval Conference (TREC-18). 2009 .PDF icon Report_on_the_trec_2009_experiments_Chem.pdf (426.58 KB)
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. QA-driven guidelines generation for bacteriotherapy. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2009 ;2009:509-13.PDF icon QAdriven_2009.pdf (163.46 KB)
Vishnyakova D, Bottone S, Pasche E, Lovis C. Practical implementation of a bridge between legacy EHR system and a clinical research environment. Stud Health Technol Inform. 2014 ;197:29-33.PDF icon SHTI197-0029 (1).pdf (215.19 KB)
Mottin L, Gobeill J, Pasche E, Michel P-A, Cusin I, Gaudet P, Ruch P. neXtA5: accelerating annotation of articles via automated approaches in neXtProt. Database (Oxford) [Internet]. 2016 ;2016. Available from: icon baw098.pdf (1.04 MB)
Gobeill J, Pasche E, Vishnyakova D, Ruch P. Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database (Oxford). 2013 ;2013:bat041.PDF icon Managing data deluge.pdf (192.78 KB)
Teodoro D, Choquet R, Schober D, Mels G, Pasche E, Ruch P, Lovis C. Interoperability driven integration of biomedical data sources. Stud Health Technol Inform. 2011 ;169:185-189.PDF icon DTMIE2011.pdf (525.97 KB)
Choquet R, Qouiyd S, Ouagne D, Pasche E, Daniel C, Boussaïd O, Jaulent M-C. The Information Quality Triangle: a methodology to assess clinical information quality. Studies in health technology and informatics. 2010 ;160(Pt 1):699-703.
Pasche E, Gobeill J, Oezdemir-Zaech F, Vachon T, Lovis C, Ruch P. Development of a text search engine for medicinal chemistry patents. EMBnet.journal [Internet]. 2012 ;18(Suppl B). Available from: icon Developmenttext_2012.pdf (82.57 KB)
Pasche E, Gobeill J, Kreim O, Oezdemir-Zaech F, Vachon T, Lovis C, Ruch P. Development and tuning of an original search engine for patent libraries in medicinal chemistry. BMC Bioinformatics. 2014 ;15 Suppl 1:S15.PDF icon 1471-2105-15-s1-s15.pdf (1.16 MB)
Pasche E, Chinali M, Gobeill J, Ruch P. Development and Evaluation of a Case-Based Retrieval Service. Studies in health technology and informatics. 2017 ;235:186.PDF icon developmentCBR_preprint.pdf (176.88 KB)
Gobeill J, Gaudinat A, Pasche E, Vishnyakova D, Gaudet P, Bairoch A, Ruch P. Deep Question Answering for protein annotation. Database (Oxford). 2015 ;2015.PDF icon Database-2015-Gobeill-database_bav081.pdf (587.33 KB)
Lovis C, Teodoro D, Pasche E, Ruch P, Colaert D, Stroetmann K. DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases. Studies in health technology and informatics. 2009 ;148:50-9.
Pasche E, Gobeill J, Mottin L, Mottaz A, Teodoro D, Van Rijen P, Ruch P. Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC 2017 Proceedings [Internet]. 2018 . Available from: icon BiTeM-PM-2017.pdf (318.65 KB)
Teodoro D, Pasche E, Vishnyakova D, De Vloed B, Depraetere K, Ruch P, Lovis C. A cross-site antimicrobial resistance surveillance system using semantic web technologies. BMC Proceedings [Internet]. 2011 ;5:O35. Available from:
Gobeill J, Pasche E, Vishnyakova D, Ruch P. Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database (Oxford). 2014 ;2014.PDF icon Closing the loop.pdf (362.62 KB)
Vishnyakova D, Pasche E, Gobeill J, Gaudinat A, Lovis C, Ruch P. Classification and prioritization of biomedical literature for the comparative toxicogenomics database. Studies in health technology and informatics. 2012 ;180:210-4.PDF icon pmid22874182.pdf (177.05 KB)