BITEM Biblio

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Conference Paper
Naderi N, Gobeill J, Teodoro D, Pasche E, Ruch P. A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. In: Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. ; 2019. Available from: http://ceur-ws.org/Vol-2380/paper_111.pdf
Knafou J, Naderi N, Copara J, Teodoro D, Ruch P. BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models. In: Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020). Proceedings of the Sixth Workshop on Noisy User-generated Text (W-NUT 2020). Online: Association for Computational Linguistics; 2020. Available from: https://www.aclweb.org/anthology/2020.wnut-1.40PDF icon 2020.wnut-1.40.pdf (842.21 KB)
Copara J, Knafou J, Naderi N, Moro C, Ruch P, Teodoro D. Contextualized French Language Models for Biomedical Named Entity Recognition. In: Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 31e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues. Actes de la 6e conférence conjointe Journées d'Études sur la Parole (JEP, 31e édition), Traitement Automatique des Langues Naturelles (TALN, 27e édition), Rencontre des Étudiants Chercheurs en Informatique pour le Traitement Automatique des Langues. ATALA; 2020.
Van Rijen P, Teodoro D, Naderi N, Mottin L, Knafou J, Jeffryes M, Ruch P. A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts. In: Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. ; 2019. Available from: http://ceur-ws.org/Vol-2380/paper_79.pdf
Goldman JP, Gaudinat A, Nerima L, Wehrli E. FipsVox: a French TTS based on a syntactic parser. In: 4th. ISCA international Workshop on speech synthesis (SSW4). 4th. ISCA international Workshop on speech synthesis (SSW4). Citeseer; 2001. Available from: http://bitem.hesge.ch/sites/default/files/biblio/GOLDMAN_2001.pdfPDF icon GOLDMAN_2001.pdf (127.93 KB)
Journal Article
Névéol A, Mary V, Gaudinat A, Boyer C, Rogozan A, Darmoni S. A benchmark evaluation of the French MeSH indexers. Artificial Intelligence in Medicine [Internet]. 2005 :251–255. Available from: http://bitem.hesge.ch/sites/default/files/biblio/Neveol2005d.pdfPDF icon Neveol2005d.pdf (164.81 KB)
Humphrey SM, Névéol A, Gobeil J, Ruch P, Darmoni SJ, Browne A. Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. Journal of the American Society for Information Science and Technology (Print). 2009 ;60(12):2530-2539.
Schober D, Boeker M, Bullenkamp J, Huszka C, Depraetere K, Teodoro D, Nadah N, Choquet R, Daniel C, Schulz S. The DebugIT core ontology: semantic integration of antibiotics resistance patterns. Stud Health Technol Inform [Internet]. 2010 ;160:1060-1064. Available from: http://www.hubmed.org/fulltext.cgi?uids=20841846PDF icon DSMEDINFO2010.pdf (421.84 KB)
Ouagne D, Nadah N, Schober D, Choquet R, Teodoro D, Colaert D, Schulz S, Jaulent MC, Daniel C. Ensuring HL7-based information model requirements within an ontology framework. Studies in health technology and informatics. 2010 ;160:912.PDF icon DOMEDINFO2009.pdf (633.39 KB)
Rosciano F, Holzapfel M, Kaiser H, Scheifele W, Ruch P, Hahn M, Kötz R, Novák P. A multi-sample automatic system for in situ electrochemical X-ray diffraction synchrotron measurements. Journal of synchrotron radiation. 2007 ;14(Pt 6):487-91.
Collier N, Nazarenko A, Baud R, Ruch P. Recent advances in natural language processing for biomedical applications. International journal of medical informatics. 2006 ;75(6):413-7.
Zweigenbaum P, Baud R, Burgun A, Namer F, Jarrousse E, Grabar N, Ruch P, Le Duff F, Thirion B, Darmoni S. Towards a unified medical lexicon for French. Studies in health technology and informatics. 2003 ;95:415-20.
Zweigenbaum P, Baud R, Burgun A, Namer F, Jarrousse E, Grabar N, Ruch P, Le Duff F, Forget J-F, Douyère M, et al. UMLF: a unified medical lexicon for French. International journal of medical informatics. 2005 ;74(2-4):119-24.
Zweigenbaum P, Baud R, Burgun A, Namer F, Jarrousse E, Grabar N, Ruch P, Le Duff F, Thirion B, Darmoni S. UMLF: a Unified Medical Lexicon for French. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2003 :1062.
Teodoro D, Knafou J, Naderi N, Pasche E, Gobeill J, Arighi CN, Ruch P. UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020 ;2020. Available from: https://doi.org/10.1093/database/baaa026