BITEM Biblio

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A
Britan A, Cusin I, Hinard V, Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Teixeira D, Michel P-A, et al. Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database [Internet]. 2018 ;2018. Available from: https://academic.oup.com/database/article/doi/10.1093/database/bay129/5255187http://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdfPDF icon bay129.pdf (18.93 MB)
Britan A, Cusin I, Hinard V, Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Teixeira D, Michel P-A, et al. Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database [Internet]. 2018 ;2018. Available from: https://academic.oup.com/database/article/doi/10.1093/database/bay129/5255187http://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdfPDF icon bay129.pdf (18.93 MB)
Britan A, Cusin I, Hinard V, Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Teixeira D, Michel P-A, et al. Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database [Internet]. 2018 ;2018. Available from: https://academic.oup.com/database/article/doi/10.1093/database/bay129/5255187http://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdfPDF icon bay129.pdf (18.93 MB)
Pasche E, Gobeill J, Teodoro D, Gaudinat A, Vishnykova D, Lovis C, Ruch P. An advanced search engine for patent analytics in medicinal chemistry. Studies in health technology and informatics. 2012 ;180:204-9.PDF icon advancedsearchengine_2012.pdf (632.5 KB)
Pasche E, Gobeill J, Teodoro D, Gaudinat A, Vishnykova D, Lovis C, Ruch P. An advanced search engine for patent analytics in medicinal chemistry. Studies in health technology and informatics. 2012 ;180:204-9.PDF icon advancedsearchengine_2012.pdf (632.5 KB)
Hersh WR, Müller H, Jensen JR, Yang J, Gorman PN, Ruch P. Advancing biomedical image retrieval: development and analysis of a test collection. Journal of the American Medical Informatics Association : JAMIA. 2006 ;13(5):488-96.
Müller H, Boyer C, Gaudinat A, Hersh W, Geissbuhler A. Analyzing web log files of the health on the net HONmedia search engine to define typical image search tasks for image retrieval evaluation. Studies in health technology and informatics. 2007 ;129(Pt 2):1319-23.PDF icon 10.1.1.572.4791.pdf (166.77 KB)
Müller H, Boyer C, Gaudinat A, Hersh W, Geissbuhler A. Analyzing web log files of the health on the net HONmedia search engine to define typical image search tasks for image retrieval evaluation. Studies in health technology and informatics. 2007 ;129(Pt 2):1319-23.PDF icon 10.1.1.572.4791.pdf (166.77 KB)
Veuthey A-L, Bridge A, Gobeill J, Ruch P, McEntyre JR, Bougueleret L, Xenarios I. Application of text-mining for updating protein post-translational modification annotation in UniProtKB. BMC Bioinformatics. 2013 ;14(1):104.
Pasche E, Ruch P, Teodoro D, Huttner A, Harbarth S, Gobeill J, Wipfli R, Lovis C. Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines. PLoS ONE [Internet]. 2013 ;8:e62874. Available from: http://dx.doi.org/10.1371%2Fjournal.pone.0062874
Pasche E, Gobeill J, Teodoro D, Vishnyakova D, Huttner A, Ruch P, Lovis C. Assister la création de guides de bonnes pratiques par des techniques de recherche d’information. Swiss Medical Informatics [Internet]. 2012 ;28. Available from: http://157.161.181.107/smi/index.php/smiojs/article/view/15PDF icon assistercreation_2012.pdf (356.21 KB)
Gaudinat A, Boyer C. Automatic extraction of MeSH terms from Medline abstracts. In: Workshop on natural language processing in biomedical applications. Workshop on natural language processing in biomedical applications. ; 2002. pp. 53–57. Available from: http://bitem.hesge.ch/sites/default/files/biblio/2002_ag.pdfPDF icon 2002_ag.pdf (88.41 KB)
Teodoro D, Gobeill J, Pasche E, Ruch P, Vishnyakova D, Lovis C. Automatic IPC encoding and novelty tracking for effective patent mining. In: The 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, Question Answering, and Cross-Lingual Information Access. The 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, Question Answering, and Cross-Lingual Information Access. Tokyo, Japan; 2010. pp. 309-317. Available from: http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings8/NTCIR/03-NTCIR8-PATMN-TeodoroD.pdfPDF icon BiTeM-PATMN-NTCIR8.pdf (313.05 KB)
Ruch P, Gobeill J, Lovis C, Geissbühler A. Automatic medical encoding with SNOMED categories. BMC medical informatics and decision making. 2008 ;8 Suppl 1:S6.
Ruch P, Gobeill J, Lovis C, Geissbühler A. Automatic medical encoding with SNOMED categories. BMC medical informatics and decision making. 2008 ;8 Suppl 1:S6.
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. Automatic medical knowledge acquisition using question-answering. Studies in health technology and informatics. 2009 ;150:569-73.PDF icon AutomaticMedical_2009.pdf (189.19 KB)
Teodoro D, Gobeill J, Pasche E, Vishnyakova D, Ruch P, Lovis C. Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10. In: CLEF (Notebook Papers/LABs/Workshops). CLEF (Notebook Papers/LABs/Workshops). ; 2010. Available from: http://clef2010.org/resources/proceedings/clef2010labs_submission_119.pdfPDF icon Automatic prior art searching and patent encoding at CLEF-IP '10.pdf (293.03 KB)
Gaudinat A, Grabar N, Boyer C. Automatic Retrieval of Web Pages with Standards of Ethics and Trustworthiness Within a Medical Portal: What a Page Name Tells Us. Artificial Intelligence in Medicine [Internet]. 2007 :185–189. Available from: http://bitem.hesge.ch/sites/default/files/biblio/gaudinat-AIME2007short.pdfPDF icon gaudinat-AIME2007short.pdf (98.57 KB)
Gaudinat A, Grabar N, Boyer C. Automatic Retrieval of Web Pages with Standards of Ethics and Trustworthiness Within a Medical Portal: What a Page Name Tells Us. Artificial Intelligence in Medicine [Internet]. 2007 :185–189. Available from: http://bitem.hesge.ch/sites/default/files/biblio/gaudinat-AIME2007short.pdfPDF icon gaudinat-AIME2007short.pdf (98.57 KB)
B
Naderi N, Gobeill J, Teodoro D, Pasche E, Ruch P. A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts. In: Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. Working Notes of CLEF 2019 - Conference and Labs of the Evaluation Forum, Lugano, Switzerland, September 9-12, 2019. ; 2019. Available from: http://ceur-ws.org/Vol-2380/paper_111.pdf
Névéol A, Mary V, Gaudinat A, Boyer C, Rogozan A, Darmoni S. A benchmark evaluation of the French MeSH indexers. Artificial Intelligence in Medicine [Internet]. 2005 :251–255. Available from: http://bitem.hesge.ch/sites/default/files/biblio/Neveol2005d.pdfPDF icon Neveol2005d.pdf (164.81 KB)
Gobeill J, Pasche E, Teodoro D, Ehrler F, Ruch P. BIND: Biomedical Novelty Detection. Journée de la recherche HEG 2009. 2009 :47.
Teodoro D, Choquet R, Pasche E, Gobeill J, Daniel C, Ruch P, Lovis C. Biomedical data management: a proposal framework. Studies in health technology and informatics. 2009 ;150:175-9.PDF icon DTMIE2009.pdf (434.81 KB)
Mottin L, Gobeill J, Mottaz A, Pasche E, Gaudinat A, Ruch P. BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. In: CLEF 2016. CLEF 2016. Evora, Portugal: CEUR-WS.org - CEUR Workshop Proceedings; 2016. Available from: http://ceur-ws.org/Vol-1609/16090094.pdfPDF icon BiTeM at CLEF eHealth Evaluation Lab 2016.pdf (307.61 KB)
Mottin L, Gobeill J, Mottaz A, Pasche E, Gaudinat A, Ruch P. BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. In: CLEF 2016. CLEF 2016. Evora, Portugal: CEUR-WS.org - CEUR Workshop Proceedings; 2016. Available from: http://ceur-ws.org/Vol-1609/16090094.pdfPDF icon BiTeM at CLEF eHealth Evaluation Lab 2016.pdf (307.61 KB)

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