BITEM Biblio

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Author Title Type [ Year(Desc)]
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2014
Vishnyakova D, Gobeill J, Oezdemir-Zaech F, Kreim O, Vachon T, Clade T, Haenning X, Mikhailov D, Ruch P. Electronic processing of informed consents in a global pharmaceutical company environment. Studies in health technology and informatics [Internet]. 2014 ;205:995–999. Available from: http://doc.rero.ch/record/232970/files/Ruch_Gobeill_Processing_of_informed_consents.pdfPDF icon Ruch_Gobeill_Processing_of_informed_consents.pdf (736.99 KB)
Mao Y, Van Auken K, Li D, Arighi CN, McQuilton P, G Hayman T, Tweedie S, Schaeffer ML, Laulederkind SJF, Wang S-J, et al. Overview of the gene ontology task at BioCreative IV. Database (Oxford). 2014 ;2014.PDF icon Overview of BioCreative IV.pdf (583.24 KB)
2015
Gobeill J, Gaudinat A, Pasche E, Vishnyakova D, Gaudet P, Bairoch A, Ruch P. Deep Question Answering for protein annotation. Database (Oxford). 2015 ;2015.PDF icon Database-2015-Gobeill-database_bav081.pdf (587.33 KB)
Gobeill J, Gaudinat A, Ruch P. Instance-Based Learning for Tweet Monitoring and Categorization. In: Experimental IR Meets Multilinguality, Multimodality, and Interaction. Experimental IR Meets Multilinguality, Multimodality, and Interaction. Springer; 2015. pp. 235–240.PDF icon 370583_1_En_22_Chapter_OnlinePDF.pdf (294.92 KB)
2016
Mottin L, Gobeill J, Mottaz A, Pasche E, Gaudinat A, Ruch P. BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction. In: CLEF 2016. CLEF 2016. Evora, Portugal: CEUR-WS.org - CEUR Workshop Proceedings; 2016. Available from: http://ceur-ws.org/Vol-1609/16090094.pdfPDF icon BiTeM at CLEF eHealth Evaluation Lab 2016.pdf (307.61 KB)
Mottin L, Gobeill J, Pasche E, Michel P-A, Cusin I, Gaudet P, Ruch P. neXtA5: accelerating annotation of articles via automated approaches in neXtProt. Database (Oxford) [Internet]. 2016 ;2016. Available from: http://database.oxfordjournals.org/content/2016/baw098.fullPDF icon baw098.pdf (1.04 MB)
2017
Pasche E, Chinali M, Gobeill J, Ruch P. Development and Evaluation of a Case-Based Retrieval Service. Studies in health technology and informatics. 2017 ;235:186.PDF icon developmentCBR_preprint.pdf (176.88 KB)
Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Michel P-A?, Bairoch A, Gaudet P, Ruch P. Triage by ranking to support the curation of protein interactions. Database [Internet]. 2017 ;2017(1). Available from: https://academic.oup.com/database/article-lookup/doi/10.1093/database/bax040PDF icon bax040.pdf (830.35 KB)
2018
Britan A, Cusin I, Hinard V, Mottin L, Pasche E, Gobeill J, de Laval VRech, Gleizes A, Teixeira D, Michel P-A, et al. Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt. Database [Internet]. 2018 ;2018. Available from: https://academic.oup.com/database/article/doi/10.1093/database/bay129/5255187http://academic.oup.com/database/article-pdf/doi/10.1093/database/bay129/27329435/bay129.pdfPDF icon bay129.pdf (18.93 MB)
Pasche E, Gobeill J, Mottin L, Mottaz A, Teodoro D, Van Rijen P, Ruch P. Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC 2017 Proceedings [Internet]. 2018 . Available from: https://trec.nist.gov/pubs/trec26/papers/BiTeM-PM.pdfPDF icon BiTeM-PM-2017.pdf (318.65 KB)
2020
Teodoro D, Knafou J, Naderi N, Pasche E, Gobeill J, Arighi CN, Ruch P. UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020 ;2020. Available from: https://doi.org/10.1093/database/baaa026

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