BITEM Biblio

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Journal Article
Lu Z, Kao HY, Wei CH, Huang M, Liu J, Kuo CJ, Hsu CN, Tsai RT, Dai HJ, Okazaki N, et al. The gene normalization task in BioCreative III. BMC Bioinformatics. 2011 ;12 Suppl 8:S2.
Gobeill J, Tbahriti I, Ehrler F, Mottaz A, Veuthey A-L, Ruch P. Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction. BMC bioinformatics. 2008 ;9 Suppl 3:S9.
Gaudinat A, Ruch P, Joubert M, Uziel P, Strauss A, Thonnet M, Baud R, Spahni S, Weber P, Bonal J, et al. Health search engine with e-document analysis for reliable search results. International journal of medical informatics [Internet]. 2006 ;75(1):73-85. Available from: http://bitem.hesge.ch/sites/default/files/biblio/AG_IJMI_2006.pdfPDF icon AG_IJMI_2006.pdf (585.54 KB)
Teodoro D, Choquet R, Schober D, Mels G, Pasche E, Ruch P, Lovis C. Interoperability driven integration of biomedical data sources. Stud Health Technol Inform. 2011 ;169:185-189.PDF icon DTMIE2011.pdf (525.97 KB)
Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo C-J, Hsu C-N, Tsai RT-H, Hung H-C, Lau WW, et al. Introducing meta-services for biomedical information extraction. Genome biology. 2008 ;9 Suppl 2:S6.
Mottaz A, Yip YL, Ruch P, Veuthey A-L. Mapping proteins to disease terminologies: from UniProt to MeSH. BMC bioinformatics. 2008 ;9 Suppl 5:S3.
Ruch P. A medical informatics perspective on decision support systems. Findings from the yearbook 2012 section on decision support. Yearb Med Inform. 2012 ;7:113–116.
Ruch P. A medical informatics perspective on health informatics 3.0. Findings from the yearbook 2011 section on health informatics 3.0. Yearb Med Inform. 2011 ;6:30–32.
Fabry P, Baud R, Ruch P, Despont-Gros C, Lovis C. Methodology to ease the construction of a terminology of problems. International journal of medical informatics. 2006 ;75(8):624-32.
Rosciano F, Holzapfel M, Kaiser H, Scheifele W, Ruch P, Hahn M, Kötz R, Novák P. A multi-sample automatic system for in situ electrochemical X-ray diffraction synchrotron measurements. Journal of synchrotron radiation. 2007 ;14(Pt 6):487-91.
Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, et al. Overview of BioCreative II gene normalization. Genome biology. 2008 ;9 Suppl 2:S3.
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. QA-driven guidelines generation for bacteriotherapy. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2009 ;2009:509-13.PDF icon QAdriven_2009.pdf (163.46 KB)
Collier N, Nazarenko A, Baud R, Ruch P. Recent advances in natural language processing for biomedical applications. International journal of medical informatics. 2006 ;75(6):413-7.
Baud RH, Ceusters W, Ruch P, Rassinoux A-M, Lovis C, Geissbühler A. Reconciliation of ontology and terminology to cope with linguistics. Studies in health technology and informatics. 2007 ;129(Pt 1):796-801.
Gobeill J, Teodoro D, Pasche E, Ruch P. Report on the trec 2009 experiments: Chemical ir track. the Eighteenth Text REtrieval Conference (TREC-18). 2009 .PDF icon Report_on_the_trec_2009_experiments_Chem.pdf (426.58 KB)
Zweigenbaum P, Baud R, Burgun A, Namer F, Jarrousse E, Grabar N, Ruch P, Le Duff F, Thirion B, Darmoni S. Towards a unified medical lexicon for French. Studies in health technology and informatics. 2003 ;95:415-20.
Zweigenbaum P, Baud R, Burgun A, Namer F, Jarrousse E, Grabar N, Ruch P, Le Duff F, Forget J-F, Douyère M, et al. UMLF: a unified medical lexicon for French. International journal of medical informatics. 2005 ;74(2-4):119-24.
Zweigenbaum P, Baud R, Burgun A, Namer F, Jarrousse E, Grabar N, Ruch P, Le Duff F, Thirion B, Darmoni S. UMLF: a Unified Medical Lexicon for French. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2003 :1062.
Ruch P, Boyer C, Chichester C, Tbahriti I, Geissbühler A, Fabry P, Gobeill J, Pillet V, Rebholz-Schuhmann D, Lovis C, et al. Using argumentation to extract key sentences from biomedical abstracts. International journal of medical informatics. 2007 ;76(2-3):195-200.
Tbahriti I, Chichester C, Lisacek F, Ruch P. Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library. International journal of medical informatics. 2006 ;75(6):488-95.
Ruch P, Geissbühler A, Gobeill J, Lisacek F, Tbahriti I, Veuthey A-L, Aronson AR. Using discourse analysis to improve text categorization in MEDLINE. Studies in health technology and informatics. 2007 ;129(Pt 1):710-5.
Ruch P, Baud R, Geissbühler A. Using lexical disambiguation and named-entity recognition to improve spelling correction in the electronic patient record. Artificial intelligence in medicine. 2003 ;29(1-2):169-84.PDF icon PruAIMPost2.pdf (93.19 KB)
Pasche E, Gobeill J, Teodoro D, Vishnyakova D, Gaudinat A, Ruch P, Lovis C. Using multimodal mining to drive clinical guidelines development. Studies in health technology and informatics. 2011 ;169:477-81.PDF icon UsingMultimodal_2011.pdf (206.92 KB)

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