BITEM Biblio

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Conference Paper
Teodoro D, Gobeill J, Pasche E, Ruch P, Vishnyakova D, Lovis C. Automatic IPC encoding and novelty tracking for effective patent mining. In: The 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, Question Answering, and Cross-Lingual Information Access. The 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, Question Answering, and Cross-Lingual Information Access. Tokyo, Japan; 2010. pp. 309-317. Available from: http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings8/NTCIR/03-NTCIR8-PATMN-TeodoroD.pdf BiTeM-PATMN-NTCIR8.pdf (313.05 KB)
Ruch P, Gaudinat A. Comparing corpora and lexical ambiguity. In: Proceedings of the Workshop on Comparing Corpora. Proceedings of the Workshop on Comparing Corpora. Association for Computational Linguistics; 2000. pp. 14–19. Available from: http://bitem.hesge.ch/sites/default/files/biblio/RUCH_2000.pdf RUCH_2000.pdf (514.87 KB)
Choquet R, KARLSSON D, Schober D, DAUMKE P, Ruch P, Teodoro D, Mels G, ASSELE A. Exchanging biomedical information at large scale using the Semantic Web. In: MIE 2011 - EFMI TRACE Working Group Workshop. MIE 2011 - EFMI TRACE Working Group Workshop. ; 2011.
Vishnyakova D, Pasche E, Douglas T, Lovis C, Ruch P. Pathogens and Gene Product Normalization in the Biomedical Literature. In: Large Scale Projects in Ehealth: Partnership in Modernization. Large Scale Projects in Ehealth: Partnership in Modernization. Ios PressInc; 2012. pp. 89–93. STC2012_Vishnyakova.pdf (294.94 KB)
Journal Article
Hersh WR, Müller H, Jensen JR, Yang J, Gorman PN, Ruch P. Advancing biomedical image retrieval: development and analysis of a test collection. Journal of the American Medical Informatics Association : JAMIA. 2006;13(5):488-96.
Ruch P. Automatic assignment of biomedical categories: toward a generic approach. Bioinformatics (Oxford, England). 2006;22(6):658-64.
Ruch P, Gobeill J, Lovis C, Geissbühler A. Automatic medical encoding with SNOMED categories. BMC medical informatics and decision making. 2008;8 Suppl 1:S6.
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. Automatic medical knowledge acquisition using question-answering. Studies in health technology and informatics. 2009;150:569-73. AutomaticMedical_2009.pdf (189.19 KB)
Gobeill J, Pasche E, Teodoro D, Ehrler F, Ruch P. BIND: Biomedical Novelty Detection. Journée de la recherche HEG 2009. 2009:47.
Teodoro D, Choquet R, Pasche E, Gobeill J, Daniel C, Ruch P, Lovis C. Biomedical data management: a proposal framework. Studies in health technology and informatics. 2009;150:175-9. DTMIE2009.pdf (434.81 KB)
Gobeill J, Gaudinat A, Pasche E, Teodoro D, Vishnyakova D, Ruch P. BiTeM group report for TREC Medical Records Track 2011.
Gobeill J, Gaudinat A, Pasche E, Teodoro D, Vishnyakova D, Ruch P. BiTeM site report for TREC Chemistry 2010: Impact of Citations Feedback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval.
Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P, Lovis C. Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. J. Med. Internet Res. 2012;14:e73.
Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P, Lovis C. Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. Journal of Medical Internet Research [Internet]. 2012;14:e73. Available from: http://www.jmir.org/2012/3/e73/
Ehrler F, Ruch P, Geissbuhler A, Lovis C. Challenges and methodology for indexing the computerized patient record. Studies in health technology and informatics. 2007;129(Pt 1):417-21.
Humphrey SM, Névéol A, Gobeil J, Ruch P, Darmoni SJ, Browne A. Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. Journal of the American Society for Information Science and Technology (Print). 2009;60(12):2530-2539.
Baud RH, Ruch P, Gaudinat A, Fabry P, Lovis C, Geissbuhler A. Coping with the variability of medical terms. Studies in health technology and informatics. 2004;107(Pt 1):322-6.
Teodoro D, Pasche E, Vishnyakova D, De Vloed B, Depraetere K, Ruch P, Lovis C. A cross-site antimicrobial resistance surveillance system using semantic web technologies. BMC Proceedings [Internet]. 2011;5:O35. Available from: http://www.biomedcentral.com/1753-6561/5/S6/O35
Ehrler F, Geissbühler A, Jimeno A, Ruch P. Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot. BMC bioinformatics. 2005;6 Suppl 1:S23.
Lovis C, Teodoro D, Pasche E, Ruch P, Colaert D, Stroetmann K. DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases. Studies in health technology and informatics. 2009;148:50-9.
Iavindrasana J, Depeursinge A, Ruch P, Spahni S, Geissbuhler A, Müller H. Design of a decentralized reusable research database architecture to support data acquisition in large research projects. Studies in health technology and informatics. 2007;129(Pt 1):325-9.
Ruch P, Baud R, Chichester C, Geissbühler A, Lisacek F, Marty J, Rebholz-Schuhmann D, Tbahriti I, Veuthey A-L. Extracting key sentences with latent argumentative structuring. Studies in health technology and informatics. 2005;116:835-40.
Fabry P, Baud R, Ruch P, Le Beux P, Lovis C. A frame-based representation of ICD-10. Studies in health technology and informatics. 2003;95:433-8.
Ruch P, Gobeilla J, Tbahritia I, Geissbühlera A. From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2008:636-40.
Baud R, Ruch P. The future of natural language processing for biomedical applications. International journal of medical informatics. 2002;67(1-3):1-5.

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