BITEM Biblio

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Journal Article
Hersh WR, Müller H, Jensen JR, Yang J, Gorman PN, Ruch P. Advancing biomedical image retrieval: development and analysis of a test collection. Journal of the American Medical Informatics Association : JAMIA. 2006 ;13(5):488-96.
Müller H, Boyer C, Gaudinat A, Hersh W, Geissbuhler A. Analyzing web log files of the health on the net HONmedia search engine to define typical image search tasks for image retrieval evaluation. Studies in health technology and informatics. 2007 ;129(Pt 2):1319-23.PDF icon 10.1.1.572.4791.pdf (166.77 KB)
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. Automatic medical knowledge acquisition using question-answering. Studies in health technology and informatics. 2009 ;150:569-73.PDF icon AutomaticMedical_2009.pdf (189.19 KB)
Ehrler F, Ruch P, Geissbuhler A, Lovis C. Challenges and methodology for indexing the computerized patient record. Studies in health technology and informatics. 2007 ;129(Pt 1):417-21.
Gaudinat A, Grabar N, Boyer C. Combination of heterogeneous criteria for the automatic detection of ethical principles on health web sites. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium [Internet]. 2007 :264-8. Available from: http://bitem.hesge.ch/sites/default/files/biblio/AMIA-0862-S2007.pdfPDF icon AMIA-0862-S2007.pdf (169.51 KB)
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Lovis C, Teodoro D, Pasche E, Ruch P, Colaert D, Stroetmann K. DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases. Studies in health technology and informatics. 2009 ;148:50-9.
Iavindrasana J, Depeursinge A, Ruch P, Spahni S, Geissbuhler A, Müller H. Design of a decentralized reusable research database architecture to support data acquisition in large research projects. Studies in health technology and informatics. 2007 ;129(Pt 1):325-9.
Baud R, Ruch P. The future of natural language processing for biomedical applications. International journal of medical informatics. 2002 ;67(1-3):1-5.
Lu Z, Kao H-Y, Wei C-H, Huang M, Liu J, Kuo C-J, Hsu C-N, Tsai RT-H, Dai H-J, Okazaki N, et al. The gene normalization task in BioCreative III. BMC bioinformatics. 2011 ;12 Suppl 8:S2.
Boyer C, Gaudinat A, Baujard V, Geissbühler A. Health on the Net Foundation: assessing the quality of health web pages all over the world. Studies in health technology and informatics. 2007 ;129(Pt 2):1017-21.
Leitner F, Krallinger M, Rodriguez-Penagos C, Hakenberg J, Plake C, Kuo C-J, Hsu C-N, Tsai RT-H, Hung H-C, Lau WW, et al. Introducing meta-services for biomedical information extraction. Genome biology. 2008 ;9 Suppl 2:S6.
Gaudinat A, Grabar N, Boyer C. Machine learning approach for automatic quality criteria detection of health web pages. Studies in health technology and informatics. 2007 ;129(Pt 1):705-9.
Mottaz A, Yip YL, Ruch P, Veuthey A-L. Mapping proteins to disease terminologies: from UniProt to MeSH. BMC bioinformatics. 2008 ;9 Suppl 5:S3.
Morgan AA, Lu Z, Wang X, Cohen AM, Fluck J, Ruch P, Divoli A, Fundel K, Leaman R, Hakenberg J, et al. Overview of BioCreative II gene normalization. Genome biology. 2008 ;9 Suppl 2:S3.
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. QA-driven guidelines generation for bacteriotherapy. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2009 ;2009:509-13.PDF icon QAdriven_2009.pdf (163.46 KB)
Cruchet S, Gaudinat A, Boyer C. Supervised approach to recognize question type in a QA system for health. Studies in health technology and informatics [Internet]. 2008 ;136:407-12. Available from: http://bitem.hesge.ch/sites/default/files/biblio/scruchetHON_MIE2008_v3.pdfPDF icon scruchetHON_MIE2008_v3.pdf (69.89 KB)
Caucheteur D, Gobeill J, Mottaz A, Pasche E, Michel P-A, Mottin L, Stekhoven DJ, Barbié V, Ruch P. Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology. Stud Health Technol Inform. 2020 ;270:884-888.
Ruch P, Baud R, Geissbühler A. Using lexical disambiguation and named-entity recognition to improve spelling correction in the electronic patient record. Artificial intelligence in medicine. 2003 ;29(1-2):169-84.PDF icon PruAIMPost2.pdf (93.19 KB)
Joubert M, Gaudinat A, Boyer C, Geissbuhler A, Fieschi M, Fieschi M. WRAPIN: a tool for patient empowerment within EHR. Studies in health technology and informatics. 2007 ;129(Pt 1):147-51.
Gaudinat A, Joubert M, Aymard S, Falco L, Boyer C, Fieschi M. WRAPIN: new generation health search engine using UMLS knowledge sources for MeSH term extraction from health documentation. Studies in health technology and informatics. 2004 ;107(Pt 1):356-60.