BITEM Biblio

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Gobeill J, Gaudinat A, Pasche E, Vishnyakova D, Gaudet P, Bairoch A, Ruch P. Deep Question Answering for protein annotation. Database (Oxford). 2015 ;2015.PDF icon Database-2015-Gobeill-database_bav081.pdf (587.33 KB)
Gobeill J, Gaudinat A, Ruch P. Instance-Based Learning for Tweet Monitoring and Categorization. In: Experimental IR Meets Multilinguality, Multimodality, and Interaction. Experimental IR Meets Multilinguality, Multimodality, and Interaction. Springer; 2015. pp. 235–240.PDF icon 370583_1_En_22_Chapter_OnlinePDF.pdf (294.92 KB)
Veuthey A-L, Bridge A, Gobeill J, Ruch P, McEntyre JR, Bougueleret L, Xenarios I. Application of text-mining for updating protein post-translational modification annotation in UniProtKB. BMC Bioinformatics. 2013 ;14(1):104.
Pasche E, Ruch P, Teodoro D, Huttner A, Harbarth S, Gobeill J, Wipfli R, Lovis C. Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines. PLoS ONE [Internet]. 2013 ;8:e62874. Available from:
Anton BP, Chang Y-C, Brown P, Choi H-P, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, et al. The COMBREX project: design, methodology, and initial results. PLoS Biol. 2013 ;11(8):e1001638.PDF icon Combrex.pdf (508.12 KB)
Vishnyakova D, Gobeill J, Oezdemir-Zaech F, Kreim O, Vachon T, Clade T, Haenning X, Mikhailov D, Ruch P. Electronic processing of informed consents in a global pharmaceutical company environment. Studies in health technology and informatics. 2013 ;205:995–999.PDF icon SHTI205-0995 (1).pdf (727.63 KB)
Gobeill J, Pasche E, Vishnyakova D, Ruch P. Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database (Oxford). 2013 ;2013:bat041.PDF icon Managing data deluge.pdf (192.78 KB)
Pasche E, Gobeill J, Vishnyakova D, Ruch P, Lovis C. Use of controlled vocabularies to improve biomedical information retrieval tasks. Stud Health Technol Inform. 2013 ;192:1068.PDF icon UseOfControlled2013.pdf (122.26 KB)