BITEM Biblio
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. Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009. Multilingual Information Access Evaluation I. Text Retrieval Experiments. 2010 ;6241:444–451.
. Using multimodal mining to drive clinical guidelines development. Studies in health technology and informatics. 2011 ;169:477-81.
UsingMultimodal_2011.pdf (206.92 KB)
UsingMultimodal_2011.pdf (206.92 KB). A user-friendly tool for medical-related patent retrieval. Studies in health technology and informatics. 2012 ;174:121-5. userfriendly_2012.pdf (621.48 KB)
userfriendly_2012.pdf (621.48 KB). UPCLASS: a deep learning-based classifier for UniProtKB entry publications. Database [Internet]. 2020 ;2020. Available from: https://doi.org/10.1093/database/baaa026
. Report on the trec 2009 experiments: Chemical ir track. the Eighteenth Text REtrieval Conference (TREC-18). 2009 . Report_on_the_trec_2009_experiments_Chem.pdf (426.58 KB)
Report_on_the_trec_2009_experiments_Chem.pdf (426.58 KB). QA-driven guidelines generation for bacteriotherapy. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2009 ;2009:509-13. QAdriven_2009.pdf (163.46 KB)
QAdriven_2009.pdf (163.46 KB). ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers. PloS one. 2018 ;13:e0190028. journal.pone_.0190028.pdf (3.18 MB)
journal.pone_.0190028.pdf (3.18 MB). Interoperability driven integration of biomedical data sources. Stud Health Technol Inform. 2011 ;169:185-189. DTMIE2011.pdf (525.97 KB)
DTMIE2011.pdf (525.97 KB). Ensuring HL7-based information model requirements within an ontology framework. Studies in health technology and informatics. 2010 ;160:912. DOMEDINFO2009.pdf (633.39 KB)
DOMEDINFO2009.pdf (633.39 KB). The DebugIT core ontology: semantic integration of antibiotics resistance patterns. Stud Health Technol Inform [Internet]. 2010 ;160:1060-1064. Available from: http://www.hubmed.org/fulltext.cgi?uids=20841846 DSMEDINFO2010.pdf (421.84 KB)
DSMEDINFO2010.pdf (421.84 KB). DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases. Studies in health technology and informatics. 2009 ;148:50-9.
. Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine. TREC 2017 Proceedings [Internet]. 2018 . Available from: https://trec.nist.gov/pubs/trec26/papers/BiTeM-PM.pdf BiTeM-PM-2017.pdf (318.65 KB)
BiTeM-PM-2017.pdf (318.65 KB). A cross-site antimicrobial resistance surveillance system using semantic web technologies. BMC Proceedings [Internet]. 2011 ;5:O35. Available from: http://www.biomedcentral.com/1753-6561/5/S6/O35
The CMS CERN Analysis Facility (CAF). Journal of Physics: Conference Series. 2010 ;219:052022. The CMS CERN Analysis Facility (CAF).pdf (933.69 KB)
The CMS CERN Analysis Facility (CAF).pdf (933.69 KB). Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. Journal of Medical Internet Research [Internet]. 2012 ;14:e73. Available from: http://www.jmir.org/2012/3/e73/
. BiTeM group report for TREC Medical Records Track 2011. 2011 . RUCH_BitemGroupeTRECmedical2011.pdf (285.04 KB)
RUCH_BitemGroupeTRECmedical2011.pdf (285.04 KB). Biomedical data management: a proposal framework. Studies in health technology and informatics. 2009 ;150:175-9. DTMIE2009.pdf (434.81 KB)
DTMIE2009.pdf (434.81 KB). BIND: Biomedical Novelty Detection. Journée de la recherche HEG 2009. 2009 :47.
. Automatic medical knowledge acquisition using question-answering. Studies in health technology and informatics. 2009 ;150:569-73. AutomaticMedical_2009.pdf (189.19 KB)
AutomaticMedical_2009.pdf (189.19 KB). Assister la création de guides de bonnes pratiques par des techniques de recherche d’information. Swiss Medical Informatics [Internet]. 2012 ;28. Available from: http://157.161.181.107/smi/index.php/smiojs/article/view/15 assistercreation_2012.pdf (356.21 KB)
assistercreation_2012.pdf (356.21 KB). Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines. PLoS ONE [Internet]. 2013 ;8:e62874. Available from: http://dx.doi.org/10.1371%2Fjournal.pone.0062874
. An advanced search engine for patent analytics in medicinal chemistry. Studies in health technology and informatics. 2012 ;180:204-9. advancedsearchengine_2012.pdf (632.5 KB)
advancedsearchengine_2012.pdf (632.5 KB). Pathogens and Genome Normalization for Literature-based Knowledge Discovery. 23 rd International Conference of the European Federation for Medical Informatics [Internet]. 2011 . Available from: http://person.hst.aau.dk/ska/mie2011/CD/MIE_2011_Content/Posters/031_or_submission_228_2_am_sm_ok.pdf MIE2001_DVISHNYAKOVA_fv.pdf (114.87 KB)
MIE2001_DVISHNYAKOVA_fv.pdf (114.87 KB). Named entity recognition in chemical patents using ensemble of contextual language models. Working Notes of CLEF2020—Conference and Labs of the Evaluation Forum (2020). 2020 .