BITEM Biblio

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Conference Paper
Teodoro D, Gobeill J, Pasche E, Ruch P, Vishnyakova D, Lovis C. Automatic IPC encoding and novelty tracking for effective patent mining. In: The 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, Question Answering, and Cross-Lingual Information Access. The 8th NTCIR Workshop Meeting on Evaluation of Information Access Technologies: Information Retrieval, Question Answering, and Cross-Lingual Information Access. Tokyo, Japan; 2010. pp. 309-317. Available from: http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings8/NTCIR/03-NTCIR8-PATMN-TeodoroD.pdfPDF icon BiTeM-PATMN-NTCIR8.pdf (313.05 KB)
Ruch P, Gaudinat A. Comparing corpora and lexical ambiguity. In: Proceedings of the Workshop on Comparing Corpora. Proceedings of the Workshop on Comparing Corpora. Association for Computational Linguistics; 2000. pp. 14–19. Available from: http://bitem.hesge.ch/sites/default/files/biblio/RUCH_2000.pdfPDF icon RUCH_2000.pdf (514.87 KB)
Choquet R, KARLSSON D, Schober D, DAUMKE P, Ruch P, Teodoro D, Mels G, ASSELE A. Exchanging biomedical information at large scale using the Semantic Web. In: MIE 2011 - EFMI TRACE Working Group Workshop. MIE 2011 - EFMI TRACE Working Group Workshop. ; 2011.
Vishnyakova D, Pasche E, Douglas T, Lovis C, Ruch P. Pathogens and Gene Product Normalization in the Biomedical Literature. In: Large Scale Projects in Ehealth: Partnership in Modernization. Large Scale Projects in Ehealth: Partnership in Modernization. Ios PressInc; 2012. pp. 89–93.PDF icon STC2012_Vishnyakova.pdf (294.94 KB)
Journal Article
Hersh WR, Müller H, Jensen JR, Yang J, Gorman PN, Ruch P. Advancing biomedical image retrieval: development and analysis of a test collection. Journal of the American Medical Informatics Association : JAMIA. 2006 ;13(5):488-96.
Ruch P. Automatic assignment of biomedical categories: toward a generic approach. Bioinformatics (Oxford, England). 2006 ;22(6):658-64.
Ruch P, Gobeill J, Lovis C, Geissbühler A. Automatic medical encoding with SNOMED categories. BMC medical informatics and decision making. 2008 ;8 Suppl 1:S6.
Pasche E, Teodoro D, Gobeill J, Ruch P, Lovis C. Automatic medical knowledge acquisition using question-answering. Studies in health technology and informatics. 2009 ;150:569-73.PDF icon AutomaticMedical_2009.pdf (189.19 KB)
Gobeill J, Pasche E, Teodoro D, Ehrler F, Ruch P. BIND: Biomedical Novelty Detection. Journée de la recherche HEG 2009. 2009 :47.
Teodoro D, Choquet R, Pasche E, Gobeill J, Daniel C, Ruch P, Lovis C. Biomedical data management: a proposal framework. Studies in health technology and informatics. 2009 ;150:175-9.PDF icon DTMIE2009.pdf (434.81 KB)
Gobeill J, Gaudinat A, Pasche E, Teodoro D, Vishnyakova D, Ruch P. BiTeM group report for TREC Medical Records Track 2011. 2011 .PDF icon RUCH_BitemGroupeTRECmedical2011.pdf (285.04 KB)
Gobeill J, Gaudinat A, Pasche E, Teodoro D, Vishnyakova D, Ruch P. BiTeM site report for TREC Chemistry 2010: Impact of Citations Feedback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval. 2010 .
Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P, Lovis C. Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. J. Med. Internet Res. 2012 ;14:e73.
Teodoro D, Pasche E, Gobeill J, Emonet S, Ruch P, Lovis C. Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation. Journal of Medical Internet Research [Internet]. 2012 ;14:e73. Available from: http://www.jmir.org/2012/3/e73/
Ehrler F, Ruch P, Geissbuhler A, Lovis C. Challenges and methodology for indexing the computerized patient record. Studies in health technology and informatics. 2007 ;129(Pt 1):417-21.
Humphrey SM, Névéol A, Gobeil J, Ruch P, Darmoni SJ, Browne A. Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. Journal of the American Society for Information Science and Technology (Print). 2009 ;60(12):2530-2539.
Baud RH, Ruch P, Gaudinat A, Fabry P, Lovis C, Geissbuhler A. Coping with the variability of medical terms. Studies in health technology and informatics. 2004 ;107(Pt 1):322-6.
Teodoro D, Pasche E, Vishnyakova D, De Vloed B, Depraetere K, Ruch P, Lovis C. A cross-site antimicrobial resistance surveillance system using semantic web technologies. BMC Proceedings [Internet]. 2011 ;5:O35. Available from: http://www.biomedcentral.com/1753-6561/5/S6/O35
Ehrler F, Geissbühler A, Jimeno A, Ruch P. Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot. BMC bioinformatics. 2005 ;6 Suppl 1:S23.
Lovis C, Teodoro D, Pasche E, Ruch P, Colaert D, Stroetmann K. DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases. Studies in health technology and informatics. 2009 ;148:50-9.
Iavindrasana J, Depeursinge A, Ruch P, Spahni S, Geissbuhler A, Müller H. Design of a decentralized reusable research database architecture to support data acquisition in large research projects. Studies in health technology and informatics. 2007 ;129(Pt 1):325-9.
Ruch P, Baud R, Chichester C, Geissbühler A, Lisacek F, Marty J, Rebholz-Schuhmann D, Tbahriti I, Veuthey A-L. Extracting key sentences with latent argumentative structuring. Studies in health technology and informatics. 2005 ;116:835-40.
Fabry P, Baud R, Ruch P, Le Beux P, Lovis C. A frame-based representation of ICD-10. Studies in health technology and informatics. 2003 ;95:433-8.
Ruch P, Gobeilla J, Tbahritia I, Geissbühlera A. From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding. AMIA .. Annual Symposium proceedings / AMIA Symposium. AMIA Symposium. 2008 :636-40.
Baud R, Ruch P. The future of natural language processing for biomedical applications. International journal of medical informatics. 2002 ;67(1-3):1-5.

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