BITEM Biblio

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Journal Article
Vishnyakova D, Pasche E, Lovis C, Ruch P. Utilization of ontology look-up services in information retrieval for biomedical literature. Stud Health Technol Inform. 2013 ;186:155-9.PDF icon efm2013.pdf (274.96 KB)
Pasche E, Gobeill J, Teodoro D, Vishnyakova D, Gaudinat A, Ruch P, Lovis C. Using multimodal mining to drive clinical guidelines development. Studies in health technology and informatics. 2011 ;169:477-81.PDF icon UsingMultimodal_2011.pdf (206.92 KB)
Vishnyakova D, Pasche E, Ruch P. Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database. Database [Internet]. 2012 ;2012. Available from: http://database.oxfordjournals.org/content/2012/bas050.full.pdf?keytype=ref&ijkey=cUFGIEaFMb9xzKY
Pasche E, Gobeill J, Teodoro D, Gaudinat A, Vishnyakova D, Lovis C, Ruch P. A user-friendly tool for medical-related patent retrieval. Studies in health technology and informatics. 2012 ;174:121-5.PDF icon userfriendly_2012.pdf (621.48 KB)
Pasche E, Gobeill J, Vishnyakova D, Ruch P, Lovis C. Use of controlled vocabularies to improve biomedical information retrieval tasks. Stud Health Technol Inform. 2013 ;192:1068.PDF icon UseOfControlled2013.pdf (122.26 KB)
Vishnyakova D, Bottone S, Pasche E, Lovis C. Practical implementation of a bridge between legacy EHR system and a clinical research environment. Stud Health Technol Inform. 2014 ;197:29-33.PDF icon SHTI197-0029 (1).pdf (215.19 KB)
Gobeill J, Pasche E, Vishnyakova D, Ruch P. Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. Database (Oxford). 2013 ;2013:bat041.PDF icon Managing data deluge.pdf (192.78 KB)
Lu Z, Kao H-Y, Wei C-H, Huang M, Liu J, Kuo C-J, Hsu C-N, Tsai RT-H, Dai H-J, Okazaki N, et al. The gene normalization task in BioCreative III. BMC bioinformatics. 2011 ;12 Suppl 8:S2.
Vishnyakova D, Gobeill J, Oezdemir-Zaech F, Kreim O, Vachon T, Clade T, Haenning X, Mikhailov D, Ruch P. Electronic processing of informed consents in a global pharmaceutical company environment. Studies in health technology and informatics. 2013 ;205:995–999.PDF icon SHTI205-0995 (1).pdf (727.63 KB)
Vishnyakova D, Gobeill J, Oezdemir-Zaech F, Kreim O, Vachon T, Clade T, Haenning X, Mikhailov D, Ruch P. Electronic processing of informed consents in a global pharmaceutical company environment. Studies in health technology and informatics [Internet]. 2014 ;205:995–999. Available from: http://doc.rero.ch/record/232970/files/Ruch_Gobeill_Processing_of_informed_consents.pdfPDF icon Ruch_Gobeill_Processing_of_informed_consents.pdf (736.99 KB)
Gobeill J, Gaudinat A, Pasche E, Vishnyakova D, Gaudet P, Bairoch A, Ruch P. Deep Question Answering for protein annotation. Database (Oxford). 2015 ;2015.PDF icon Database-2015-Gobeill-database_bav081.pdf (587.33 KB)
Teodoro D, Pasche E, Vishnyakova D, De Vloed B, Depraetere K, Ruch P, Lovis C. A cross-site antimicrobial resistance surveillance system using semantic web technologies. BMC Proceedings [Internet]. 2011 ;5:O35. Available from: http://www.biomedcentral.com/1753-6561/5/S6/O35
Gobeill J, Pasche E, Vishnyakova D, Ruch P. Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. Database (Oxford). 2014 ;2014.PDF icon Closing the loop.pdf (362.62 KB)
Vishnyakova D, Pasche E, Gobeill J, Gaudinat A, Lovis C, Ruch P. Classification and prioritization of biomedical literature for the comparative toxicogenomics database. Studies in health technology and informatics. 2012 ;180:210-4.PDF icon pmid22874182.pdf (177.05 KB)
Pasche E, Gobeill J, Teodoro D, Vishnyakova D, Huttner A, Ruch P, Lovis C. Assister la création de guides de bonnes pratiques par des techniques de recherche d’information. Swiss Medical Informatics [Internet]. 2012 ;28. Available from: http://157.161.181.107/smi/index.php/smiojs/article/view/15PDF icon assistercreation_2012.pdf (356.21 KB)