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Variomes: a high recall search engine to support the curation of genomic variants |
2021 |
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Ensemble of Deep Masked Language Models for Effective Named Entity Recognition in Health and Life Science Corpora |
2021 |
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CINECA synthetic cohort Europe CH SIB [CC-BY-NC- SA] |
2021 |
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Analyzing the information content of text-based files in supplementary materials of biomedical literature |
2021 |
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Named entity recognition in chemical patents using ensemble of contextual language models |
2020 |
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An extended overview of the CLEF 2020 ChEMU Lab : information extraction of chemical reactions from patents |
2020 |
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BiTeM at WNUT 2020 Shared Task-1: Named Entity Recognition over Wet Lab Protocols using an Ensemble of Contextual Language Models |
2020 |
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Text-Mining Services of the Swiss Variant Interpretation Platform for Oncology. |
2020 |
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SIB Literature Services: RESTful customizable search engines in biomedical literature, enriched with automatically mapped biomedical concepts. |
2020 |
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SIB text mining at TREC precision medicine 2020 |
2020 |
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Contextualized French Language Models for Biomedical Named Entity Recognition |
2020 |
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UPCLASS: a deep learning-based classifier for UniProtKB entry publications |
2020 |
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Designing retrieval models to contrast precision-driven ad hoc search vs. recall-driven treatment extraction in Precision Medicine. |
2019 |
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Assistance à la curation de publications scientifiques par des méthodes de triage et d’annotation automatiques |
2019 |
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A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm in Reddit Posts |
2019 |
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A Data-Driven Approach for Measuring the Severity of the Signs of Depression using Reddit Posts |
2019 |
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Customizing a Variant Annotation-Support Tool: an Inquiry into Probability Ranking Principles for TREC Precision Medicine |
2018 |
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ORBDA: An openEHR benchmark dataset for performance assessment of electronic health record servers |
2018 |
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Accelerating annotation of articles via automated approaches: evaluation of the neXtA5 curation-support tool by neXtProt |
2018 |
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Triage by ranking to support the curation of protein interactions |
2017 |
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Development and Evaluation of a Case-Based Retrieval Service. |
2017 |
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neXtA5: accelerating annotation of articles via automated approaches in neXtProt. |
2016 |
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BiTeM at CLEF eHealth Evaluation Lab 2016 Task 2: Multilingual Information Extraction |
2016 |
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Le plaisir de tout conserver sans modération : une question de taille ? |
2016 |
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Deep Question Answering for protein annotation. |
2015 |
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Instance-Based Learning for Tweet Monitoring and Categorization |
2015 |
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Development and tuning of an original search engine for patent libraries in medicinal chemistry. |
2014 |
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Practical implementation of a bridge between legacy EHR system and a clinical research environment. |
2014 |
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Overview of the gene ontology task at BioCreative IV. |
2014 |
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Closing the loop: from paper to protein annotation using supervised Gene Ontology classification. |
2014 |
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Instance-based Learning for Tweet Categorization in {CLEF} RepLab 2014 |
2014 |
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Electronic processing of informed consents in a global pharmaceutical company environment. |
2014 |
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Managing biomedical knowledge: computer-assisted knowledge acquisition and authoring in highly specialized domains |
2013 |
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Assisted Knowledge Discovery for the Maintenance of Clinical Guidelines |
2013 |
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Utilization of ontology look-up services in information retrieval for biomedical literature. |
2013 |
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Application of text-mining for updating protein post-translational modification annotation in UniProtKB. |
2013 |
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Use of controlled vocabularies to improve biomedical information retrieval tasks. |
2013 |
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Electronic processing of informed consents in a global pharmaceutical company environment. |
2013 |
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Using a Question-Answering Approach In Machine Reading Task Of Biomedical Texts About The Alzheimer Disease |
2013 |
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The COMBREX project: design, methodology, and initial results. |
2013 |
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Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases. |
2013 |
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Pathogens and Gene Product Normalization in the Biomedical Literature |
2012 |
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An advanced search engine for patent analytics in medicinal chemistry. |
2012 |
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Assister la création de guides de bonnes pratiques par des techniques de recherche d’information |
2012 |
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Development of a text search engine for medicinal chemistry patents |
2012 |
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Selection of relevant articles for curation for the Comparative Toxicogenomic Database |
2012 |
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A user-friendly tool for medical-related patent retrieval. |
2012 |
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System zur Unterstützung der Kuration der Toxikogenomik in der medizinischen Literatur |
2012 |
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Classification and prioritization of biomedical literature for the comparative toxicogenomics database. |
2012 |
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Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database |
2012 |
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A medical informatics perspective on decision support systems. Findings from the yearbook 2012 section on decision support |
2012 |
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Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation |
2012 |
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Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation |
2012 |
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A cross-site antimicrobial resistance surveillance system using semantic web technologies |
2011 |
|
A medical informatics perspective on health informatics 3.0. Findings from the yearbook 2011 section on health informatics 3.0 |
2011 |
|
BiTeM group report for TREC Medical Records Track 2011 |
2011 |
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Interoperability driven integration of biomedical data sources |
2011 |
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Exchanging biomedical information at large scale using the Semantic Web |
2011 |
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Using multimodal mining to drive clinical guidelines development. |
2011 |
|
Improving the transparency of health information found on the internet through the honcode: a comparative study. |
2011 |
|
Enriching the trustworthiness of health-related web pages. |
2011 |
|
KART, a knowledge authoring and refinement tool for clinical guidelines development |
2011 |
|
The gene normalization task in BioCreative III. |
2011 |
|
Pathogens and Genome Normalization for Literature-based Knowledge Discovery |
2011 |
|
The gene normalization task in BioCreative III |
2011 |
|
The DebugIT core ontology: semantic integration of antibiotics resistance patterns |
2010 |
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Simple Pre and Post Processing Strategies for Patent Searching in CLEF Intellectual Property Track 2009 |
2010 |
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Automatic IPC encoding and novelty tracking for effective patent mining |
2010 |
|
The Information Quality Triangle: a methodology to assess clinical information quality. |
2010 |
|
BiTeM site report for TREC Chemistry 2010: Impact of Citations Feedback for Patent Prior Art Search and Chemical Compounds Expansion for Ad Hoc Retrieval |
2010 |
|
The CMS CERN Analysis Facility (CAF) |
2010 |
|
Ensuring HL7-based information model requirements within an ontology framework. |
2010 |
|
Automatic Prior Art Searching and Patent Encoding at CLEF-IP '10 |
2010 |
|
Closing the loops in biomedical informatics from theory to daily practice. |
2009 |
|
BIND: Biomedical Novelty Detection |
2009 |
|
Question answering for biology and medicine |
2009 |
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Comparing a Rule Based vs. Statistical System for Automatic Categorization of MEDLINE Documents According to Biomedical Specialty. |
2009 |
|
Automatic medical knowledge acquisition using question-answering. |
2009 |
|
Biomedical data management: a proposal framework. |
2009 |
|
DebugIT: building a European distributed clinical data mining network to foster the fight against microbial diseases. |
2009 |
|
Report on the trec 2009 experiments: Chemical ir track |
2009 |
|
QA-driven guidelines generation for bacteriotherapy. |
2009 |
|
The CMS data transfer test environment in preparation for LHC data taking |
2008 |
|
Automatic medical encoding with SNOMED categories. |
2008 |
|
From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding. |
2008 |
|
Introducing meta-services for biomedical information extraction. |
2008 |
|
Overview of BioCreative II gene normalization. |
2008 |
|
Supervised approach to recognize question type in a QA system for health. |
2008 |
|
Mapping proteins to disease terminologies: from UniProt to MeSH. |
2008 |
|
The CMS data transfer test environment in preparation for LHC data taking |
2008 |
|
Gene Ontology density estimation and discourse analysis for automatic GeneRiF extraction. |
2008 |
|
A multi-sample automatic system for in situ electrochemical X-ray diffraction synchrotron measurements. |
2007 |
|
Machine learning approach for automatic quality criteria detection of health web pages. |
2007 |
|
Reconciliation of ontology and terminology to cope with linguistics. |
2007 |
|
WRAPIN: a tool for patient empowerment within EHR. |
2007 |
|
Using discourse analysis to improve text categorization in MEDLINE. |
2007 |
|
Challenges and methodology for indexing the computerized patient record. |
2007 |
|
Design of a decentralized reusable research database architecture to support data acquisition in large research projects. |
2007 |
|
Using argumentation to extract key sentences from biomedical abstracts. |
2007 |
|
Combination of heterogeneous criteria for the automatic detection of ethical principles on health web sites. |
2007 |
|
Automatic Retrieval of Web Pages with Standards of Ethics and Trustworthiness Within a Medical Portal: What a Page Name Tells Us |
2007 |
|
Analyzing web log files of the health on the net HONmedia search engine to define typical image search tasks for image retrieval evaluation. |
2007 |
|
Health on the Net Foundation: assessing the quality of health web pages all over the world. |
2007 |
|
Health search engine with e-document analysis for reliable search results. |
2006 |
|
Advancing biomedical image retrieval: development and analysis of a test collection. |
2006 |
|
Automatic assignment of biomedical categories: toward a generic approach. |
2006 |
|
Methodology to ease the construction of a terminology of problems. |
2006 |
|
Using argumentation to retrieve articles with similar citations: an inquiry into improving related articles search in the MEDLINE digital library. |
2006 |
|
Recent advances in natural language processing for biomedical applications. |
2006 |
|
Extracting key sentences with latent argumentative structuring. |
2005 |
|
A benchmark evaluation of the French MeSH indexers |
2005 |
|
Data-poor categorization and passage retrieval for gene ontology annotation in Swiss-Prot. |
2005 |
|
UMLF: a unified medical lexicon for French. |
2005 |
|
Coping with the variability of medical terms. |
2004 |
|
Birefringence in nonlinear anisotropic dielectric media |
2004 |
|
WRAPIN: new generation health search engine using UMLS knowledge sources for MeSH term extraction from health documentation. |
2004 |
|
Towards a unified medical lexicon for French. |
2003 |
|
Using lexical disambiguation and named-entity recognition to improve spelling correction in the electronic patient record. |
2003 |
|
UMLF: a Unified Medical Lexicon for French. |
2003 |
|
A frame-based representation of ICD-10. |
2003 |
|
The future of natural language processing for biomedical applications. |
2002 |
|
Automatic extraction of MeSH terms from Medline abstracts |
2002 |
|
La synthese de l’intonation a partir de structures syntaxiques riches |
2001 |
|
FipsVox: a French TTS based on a syntactic parser |
2001 |
|
«Intonation du discours et synthèse de la parole: premiers résultats d'une approche par balises» |
2001 |
|
Comparing corpora and lexical ambiguity |
2000 |
|
Syntax-based speech recognition: how a syntactic parser can help a recognition system |
1999 |
